Function reference • treespace

All functions
`DengueBEASTMCC`	Dengue fever BEAST MCC tree
`DengueSeqs`	Dengue fever sequences
`DengueTrees`	BEAST analysis of Dengue fever
`.render.server.info()`	Auxiliary functions
`findGroves()`	Identify clusters of similar trees
`findMRCIs()`	Find MRCIs
`fluTrees`	BEAST analysis of seasonal influenza (A/H3N2)
`linearMrca()`	Linear MRCA function
`makeCollapsedTree()`	Collapse a tree into a single tip per category
`medTree()`	Geometric median tree function
`multiDist()`	Metric function for `multiPhylo` input
`plotGroves()`	Scatterplot of groups of trees
`plotGrovesD3()`	Scatterplot of groups of trees using `scatterD3`
`plotTreeDiff()`	Plot tree differences
`refTreeDist()`	Metric function for comparing a reference `phylo` to `multiPhylo` input
`relatedTreeDist()`	Tree distance when trees have "related" tips
`simulateIndTree()`	Simulate randomised "individuals" tree
`tipDiff()`	Find tip position differences
`tipsMRCAdepths()`	Tip-tip MRCA depths
`treeConcordance()`	Tree concordance
`treeDist()`	Metric function
`treeVec()`	Tree vector function
`treespace()`	Phylogenetic tree exploration
`treespaceServer()`	Web-based tree explorer
`wiwMedTree()`	Median transmission tree
`wiwTreeDist()`	Transmission tree distance
`woodmiceTrees`	Bootstrap trees from woodmouse dataset

Reference